Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.9' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 24 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1900: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

36% id,
99% cov

Ga0059261_1968: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

36% id,
99% cov

Ga0059261_2637: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

34% id,
100% cov

Ga0059261_0843: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

34% id,
99% cov

Ga0059261_2882: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

33% id,
98% cov

Ga0059261_2801: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

32% id,
99% cov

Ga0059261_2843: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

32% id,
99% cov

Ga0059261_2675: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

32% id,
99% cov

Ga0059261_2871: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

31% id,
100% cov

Ga0059261_3382: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

31% id,
99% cov

Ga0059261_2771: 3-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

31% id,
98% cov

Ga0059261_0846: Zn-dependent alcohol dehydrogenases, class III
is similar to:
PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

33% id,
93% cov

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

30% id,
96% cov

Q6KAV2: D-xylulose reductase (EC 1.1.1.9) from Blastobotrys adeninivorans

30% id,
93% cov

More...

Ga0059261_2605: Threonine dehydrogenase and related Zn-dependent dehydrogenases
is similar to:
PaperBLAST

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

32% id,
91% cov

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

31% id,
93% cov

G3AIB3: D-xylulose reductase (EC 1.1.1.9) from Spathaspora passalidarum

30% id,
93% cov

More...

Ga0059261_1819: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
is similar to:
PaperBLAST

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

31% id,
95% cov

A0A3S7PMC4: D-xylulose reductase (EC 1.1.1.9) from Torulaspora delbrueckii

29% id,
99% cov

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

30% id,
94% cov

More...

Ga0059261_2825: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

29% id,
100% cov

Ga0059261_2802: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

28% id,
99% cov

Ga0059261_4226: NADPH:quinone reductase and related Zn-dependent oxidoreductases
is similar to:
PaperBLAST

S6BFC0: D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus

27% id,
94% cov

A0A3S7PMB5: D-xylulose reductase (EC 1.1.1.9) from Pichia kudriavzevii

37% id,
22% cov

Ga0059261_3648: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

36% id,
71% cov

Ga0059261_1787: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

24% id,
99% cov

Ga0059261_1992: Short-chain alcohol dehydrogenase of unknown specificity
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

30% id,
71% cov

Ga0059261_3375: NADPH:quinone reductase and related Zn-dependent oxidoreductases
is similar to:
PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

25% id,
69% cov

A0A3S7PMB5: D-xylulose reductase (EC 1.1.1.9) from Pichia kudriavzevii

30% id,
52% cov

DHSO_HUMAN / Q00796: Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens

43% id,
23% cov

More...

Ga0059261_0998: putative NAD(P)H quinone oxidoreductase, PIG3 family
is similar to:
PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

26% id,
63% cov

Ga0059261_3126: Predicted dehydrogenases and related proteins
is similar to:
PaperBLAST

DHSO1_YEAST / P35497: Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae

27% id,
63% cov

DHSO_RAT / P27867: Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus

22% id,
73% cov

Dshi_0551: D-xylulose reductase (EC 1.1.1.9) from Dinoroseobacter shibae

25% id,
61% cov

More...

Ga0059261_3813: Alcohol dehydrogenase GroES-like domain
is similar to:
PaperBLAST

DHSO_HUMAN / Q00796: Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens

38% id,
23% cov

DHSO_MOUSE / Q64442: Sorbitol dehydrogenase; SDH; SORD; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Mus musculus

35% id,
23% cov

DHSO_RAT / P27867: Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus

35% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 26 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory