Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 6 curated entries in PaperBLAST's database that match '1.1.99.2' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3482218-3483468 (frame -3) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

39% id,
15% cov

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

44% id,
13% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

43% id,
10% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory