Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 30 curated entries in PaperBLAST's database that match '1.13.11.11' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1376: Tryptophan 2,3-dioxygenase (vermilion) is similar to:	PaperBLAST
RR42_RS15390: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Cupriavidus basilensis	51% id, 90% cov
T23O_CUPMC / Q1LK00: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Cupriavidus metallidurans kynA: tryptophan 2,3-dioxygenase; EC 1.13.11.11 from Ralstonia metallidurans	52% id, 87% cov
PfGW456L13_4292: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas fluorescens	48% id, 93% cov
PS417_23705: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas simiae	47% id, 92% cov
AO353_05970: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas fluorescens	48% id, 91% cov
T23O_PSEFL / Q84HF6: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Pseudomonas fluorescens	46% id, 93% cov
acmG / D6R243: tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Streptomyces anulatus	42% id, 91% cov
T23O_XANCP / Q8PDA8: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Xanthomonas campestris kynA: tryptophan 2,3-dioxygenase; EC 1.13.11.11 from Xanthomonas campestris Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris	43% id, 87% cov
T23O_TRICA / Q95NN1: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Tribolium castaneum	34% id, 52% cov
T23O_DROME / P20351: Tryptophan 2,3-dioxygenase; TDO; Protein vermilion; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Drosophila melanogaster P20351: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Drosophila melanogaster	46% id, 33% cov
A7RFF0: tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Nematostella vectensis	40% id, 35% cov
T23O_AEDAE / Q17P71: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Aedes aegypti	43% id, 33% cov
A9V766: tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Monosiga brevicollis	34% id, 38% cov
T23O_CAEEL / Q09474: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Caenorhabditis elegans Q09474: tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Caenorhabditis elegans	39% id, 33% cov
T23O_HUMAN / P48775: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Homo sapiens TDO2 / P48775: tryptophan 2,3-dioxygenase monomer (EC 1.13.11.11) from Homo sapiens P48775: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Homo sapiens	37% id, 33% cov
P48776: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Mus musculus	38% id, 32% cov
T23O_RAT / P21643: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Rattus norvegicus P21643: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Rattus norvegicus	38% id, 32% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1451008-1451814 (frame +1) on Ga0059261_unitig_0_quiver.1 is similar to:	PaperBLAST
RR42_RS15390: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Cupriavidus basilensis Also see hits to annotated proteins above	49% id, 98% cov
T23O_CUPMC / Q1LK00: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Cupriavidus metallidurans kynA: tryptophan 2,3-dioxygenase; EC 1.13.11.11 from Ralstonia metallidurans Also see hits to annotated proteins above	50% id, 92% cov
PfGW456L13_4292: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas fluorescens Also see hits to annotated proteins above	46% id, 98% cov
PS417_23705: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas simiae Also see hits to annotated proteins above	46% id, 96% cov
AO353_05970: Tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Pseudomonas fluorescens Also see hits to annotated proteins above	46% id, 97% cov
T23O_PSEFL / Q84HF6: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Pseudomonas fluorescens Also see hits to annotated proteins above	45% id, 95% cov
T23O_XANCP / Q8PDA8: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Xanthomonas campestris kynA: tryptophan 2,3-dioxygenase; EC 1.13.11.11 from Xanthomonas campestris Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris Also see hits to annotated proteins above	42% id, 89% cov
T23O_TRICA / Q95NN1: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Tribolium castaneum Also see hits to annotated proteins above	32% id, 56% cov
A7RFF0: tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Nematostella vectensis Also see hits to annotated proteins above	39% id, 38% cov
A9V766: tryptophan 2,3-dioxygenase (EC 1.13.11.11) from Monosiga brevicollis Also see hits to annotated proteins above	33% id, 41% cov
T23O_HUMAN / P48775: Tryptophan 2,3-dioxygenase; TDO; Tryptamin 2,3-dioxygenase; Tryptophan oxygenase; TO; TRPO; Tryptophan pyrrolase; Tryptophanase; EC 1.13.11.11 from Homo sapiens TDO2 / P48775: tryptophan 2,3-dioxygenase monomer (EC 1.13.11.11) from Homo sapiens P48775: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Homo sapiens Also see hits to annotated proteins above	34% id, 38% cov
P48776: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Mus musculus Also see hits to annotated proteins above	35% id, 36% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory