Searching in Sphingomonas koreensis DSMZ 15582 (Korea)
Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.
These curated entries have 126 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query
| Ga0059261_1694: homogentisate 1,2-dioxygenase (EC 1.13.11.5) is similar to: | PaperBLAST |
HGD_RHIME / Q9X4F5: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Rhizobium meliloti | 68% id, 97% cov |
RR42_RS31275: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Cupriavidus basilensis | 55% id, 94% cov |
HGD_CAEEL / Q9Y041: Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Caenorhabditis elegans | 52% id, 97% cov |
| Ga0059261_0529: Catalytic LigB subunit of aromatic ring-opening dioxygenase is similar to: | PaperBLAST |
PmdB / Q8RNX9: protocatechuate 4,5-dioxygenase β subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni | 61% id, 99% cov |
desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis | 42% id, 69% cov |
GALA_PSEPK / Q88JX5: Gallate dioxygenase; Gallate degradation protein A; EC 1.13.11.57 from Pseudomonas putida | 44% id, 57% cov |
| Ga0059261_0528: protocatechuate 4,5-dioxygenase, alpha subunit is similar to: | PaperBLAST |
PmdA / Q8RNY0: protocatechuate 4,5-dioxygenase α subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni | 59% id, 79% cov |
| Ga0059261_1376: Tryptophan 2,3-dioxygenase (vermilion) is similar to: | PaperBLAST |
Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris | 43% id, 87% cov |
P20351: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Drosophila melanogaster | 46% id, 33% cov |
P48775: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Homo sapiens | 37% id, 33% cov |
| Ga0059261_1677: Catalytic LigB subunit of aromatic ring-opening dioxygenase is similar to: | PaperBLAST |
GALA_PSEPK / Q88JX5: Gallate dioxygenase; Gallate degradation protein A; EC 1.13.11.57 from Pseudomonas putida | 31% id, 40% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1451008-1451814 (frame +1) on Ga0059261_unitig_0_quiver.1 is similar to: | PaperBLAST |
Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris | 42% id, 89% cov |
P48775: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Homo sapiens | 34% id, 38% cov |
P48776: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Mus musculus | 35% id, 36% cov |
Lawrence Berkeley National Laboratory