Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 3 curated entries in PaperBLAST's database that match '1.2.1.77' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0516: vanillin dehydrogenase (EC 1.2.1.67)
is similar to:
PaperBLAST

Q13WK4: aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5); 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

27% id,
90% cov

Ga0059261_3374: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

27% id,
84% cov

Ga0059261_1495: succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
is similar to:
PaperBLAST

Q13WK4: aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5); 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

27% id,
81% cov

Ga0059261_3926: L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
is similar to:
PaperBLAST

Q13WK4: aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5); 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

23% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory