Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 8 curated entries in PaperBLAST's database that match '1.3.8.6' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2164: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

72% id,
100% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

73% id,
98% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

71% id,
100% cov

More...

Ga0059261_4052: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

33% id,
95% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

32% id,
95% cov

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

32% id,
95% cov

More...

Ga0059261_3793: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

31% id,
95% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

32% id,
91% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

31% id,
94% cov

More...

Ga0059261_3681: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

29% id,
94% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

29% id,
94% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

29% id,
94% cov

More...

Ga0059261_2856: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

27% id,
95% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

26% id,
95% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

25% id,
95% cov

More...

Ga0059261_0840: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

27% id,
96% cov

Ga0059261_0860: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

28% id,
92% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

27% id,
92% cov

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

26% id,
83% cov

More...

Ga0059261_3633: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

29% id,
87% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

29% id,
86% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

28% id,
83% cov

More...

Ga0059261_1309: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

28% id,
92% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

28% id,
83% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

26% id,
83% cov

More...

Ga0059261_2907: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

26% id,
95% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

26% id,
95% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

26% id,
95% cov

More...

Ga0059261_2845: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

23% id,
94% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

22% id,
85% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

22% id,
84% cov

More...

Ga0059261_0861: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

GCDH_HUMAN / Q92947: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Homo sapiens
Q92947: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Homo sapiens

26% id,
83% cov

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

26% id,
82% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

25% id,
80% cov

More...

Ga0059261_0839: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

25% id,
81% cov

GCDH_HUMAN / Q92947: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Homo sapiens
Q92947: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Homo sapiens

27% id,
75% cov

GCDH_MOUSE / Q60759: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Mus musculus
Q60759: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Mus musculus

24% id,
75% cov

Ga0059261_2814: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

21% id,
91% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

21% id,
92% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

26% id,
40% cov

More...

Ga0059261_2859: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

24% id,
74% cov

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

23% id,
73% cov

Ga0059261_2860: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

GCDH_PIG / P81140: Glutaryl-CoA dehydrogenase, mitochondrial; GCD; EC 1.3.8.6 from Sus scrofa

22% id,
80% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

25% id,
57% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

25% id,
57% cov

Ga0059261_2800: Acyl-CoA dehydrogenases
is similar to:
PaperBLAST

Q3JP94: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Burkholderia pseudomallei

28% id,
60% cov

B0EVL5: glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) from Azoarcus sp.

26% id,
56% cov

gcdH / Q88RH2: glutaryl-CoA dehydrogenase (EC 1.3.8.6) from Pseudomonas putida

27% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory