Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1252: NAD-specific glutamate dehydrogenase
is similar to:
PaperBLAST

AZOBR_RS00190: L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) from Azospirillum brasilense

41% id,
94% cov

A0A0H3C571: glutamate dehydrogenase (EC 1.4.1.2) from Caulobacter vibrioides

40% id,
94% cov

DHE2_MYCS2 / A0R1C2: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Mycolicibacterium smegmatis
A0R1C2: glutamate dehydrogenase (EC 1.4.1.2) from Mycolicibacterium smegmatis

38% id,
96% cov

More...

Ga0059261_0110: Glutamate dehydrogenase/leucine dehydrogenase
is similar to:
PaperBLAST

Q9Y8I4: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum islandicum

29% id,
71% cov

DHE2_PYRCJ / A3MUY9: NAD(+)-dependent glutamate dehydrogenase; NAD-GDH; NAD-specific glutamate dehydrogenase; EC 1.4.1.2 from Pyrobaculum calidifontis
A3MUY9: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum calidifontis

28% id,
70% cov

DHE2_HALSI / P29051: NAD-specific glutamate dehydrogenase A; NAD-GDH A; EC 1.4.1.2 from Halobacterium salinarum
gdhA / GB|AAW19068.1: glutamate dehydrogenase; EC 1.4.1.2 from Halobacterium salinarum
P29051: glutamate dehydrogenase (EC 1.4.1.2) from Halobacterium salinarum

29% id,
69% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory