Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 124 curated entries in PaperBLAST's database that match '1.5.1.2'.

These curated entries have 99 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0992: 5,10-methylenetetrahydrofolate reductase, prokaryotic form
is similar to:
PaperBLAST

Q6N3J2: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rhodopseudomonas palustris

55% id,
97% cov

Q9A6F4: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Caulobacter vibrioides

57% id,
92% cov

Q9CP31: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Pasteurella multocida

55% id,
95% cov

More...

Ga0059261_3321: pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

CCNA_00528: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Caulobacter crescentus

43% id,
99% cov

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

40% id,
97% cov

G7KRM5: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Medicago truncatula

36% id,
95% cov

More...

Ga0059261_3808: Pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

CCNA_00528: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Caulobacter crescentus

37% id,
99% cov

DvMF_3161: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Desulfovibrio vulgaris

33% id,
98% cov

P5CR_TREPA / P27771: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Treponema pallidum

32% id,
98% cov

More...

Ga0059261_2527: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
is similar to:
PaperBLAST

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus

42% id,
86% cov

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus

41% id,
86% cov

Ga0059261_3899: alanine dehydrogenase
is similar to:
PaperBLAST

CEO2_LACLL / P15244: N(5)-(carboxyethyl)ornithine synthase; CEOS; N(5)-(L-1-carboxyethyl)-L-ornithine:NADP(+) oxidoreductase; EC 1.5.1.24 from Lactococcus lactis
ceo / GB|AAA86385.1: N(5)-(carboxyethyl)ornithine synthase; EC 1.5.1.24 from Lactococcus lactis

25% id,
93% cov

CEO_CLOBH / A5HZ59: N(5)-(carboxyethyl)ornithine synthase; CEOS; N(5)-(L-1-carboxyethyl)-L-ornithine:NADP(+) oxidoreductase; EC 1.5.1.24 from Clostridium botulinum

26% id,
42% cov

Ga0059261_0991: Methionine synthase I (cobalamin-dependent), methyltransferase domain
is similar to:
PaperBLAST

YITJ_BACSU / O06745: Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; EC 2.1.1.10; EC 1.5.1.20 from Bacillus subtilis

30% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2618337-2619302 (frame -1) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

D3YZG8: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Mus musculus
Also see hits to annotated proteins above

41% id,
91% cov

D3ZUA0: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rattus norvegicus
Also see hits to annotated proteins above

41% id,
91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory