Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2979: malate synthase (EC 2.3.3.9)
is similar to:
PaperBLAST

Psest_0354: Malate synthase G (EC 2.3.3.9) from Pseudomonas stutzeri

60% id,
100% cov

MASZ_MYCLB / B8ZSN3: Malate synthase G; EC 2.3.3.9 from Mycobacterium leprae

58% id,
100% cov

MASZ_MYCTO / P9WK16: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis
MASZ_MYCTU / P9WK17: Malate synthase G; EC 2.3.3.9 from Mycobacterium tuberculosis
glcB / P9WK17: malate synthase G (EC 2.3.3.9) from Mycobacterium tuberculosis
P9WK17: malate synthase (EC 2.3.3.9) from Mycobacterium tuberculosis

57% id,
98% cov

More...

Ga0059261_0896: Citrate lyase beta subunit
is similar to:
PaperBLAST

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

31% id,
86% cov

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

29% id,
88% cov

Ga0059261_0570: Citrate lyase beta subunit
is similar to:
PaperBLAST

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

30% id,
85% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

30% id,
83% cov

Ga0059261_3671: Citrate lyase beta subunit
is similar to:
PaperBLAST

CLYBL_MOUSE / Q8R4N0: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein, mitochondrial; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Mus musculus

32% id,
29% cov

CLYBL_HUMAN / Q8N0X4: Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens
CLYBL / Q8N0X4: malate/β-methylmalate synthase (EC 2.3.3.9) from Homo sapiens

29% id,
29% cov

Ga0059261_1963: Isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

30% id,
23% cov

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

24% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory