Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 66 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1576: 5'-deoxy-5'-methylthioadenosine phosphorylase
is similar to:
PaperBLAST

MTIP_PSEAE / Q9HZK1: S-methyl-5'-thioinosine phosphorylase; 5'-methylthioinosine phosphorylase; MTI phosphorylase; MTIP; EC 2.4.2.44 from Pseudomonas aeruginosa
PA3004 / Q9HZK1: S-methyl-5'-thioinosine phosphorylase monomer (EC 2.4.2.44) from Pseudomonas aeruginosa
Q9HZK1: S-methyl-5'-thioinosine phosphorylase (EC 2.4.2.44) from Pseudomonas aeruginosa

36% id,
98% cov

Ga0059261_4065: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases
is similar to:
PaperBLAST

DPPRS_MYCTU / P9WFR5: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Mycobacterium tuberculosis
ubiA / P9WFR5: DPPR synthase (EC 2.4.2.45) from Mycobacterium tuberculosis
P9WFR5: decaprenyl-phosphate phosphoribosyltransferase (EC 2.4.2.45) from Mycobacterium tuberculosis

30% id,
95% cov

DPPRS_CORGL / Q8NLQ9: Decaprenyl-phosphate phosphoribosyltransferase; 5-phospho-alpha-D-ribose-1-diphosphate:decaprenyl-phosphate 5-phosphoribosyltransferase; DPPR synthase; EC 2.4.2.45 from Corynebacterium glutamicum

30% id,
66% cov

Ga0059261_1017: tRNA-guanine transglycosylase
is similar to:
PaperBLAST

Q8THU2: tRNA-guanosine34 preQ1 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

26% id,
65% cov

ATGT_METJA / Q57878: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Methanocaldococcus jannaschii
tgtA / Q57878: 7-cyano-7-deazaguanine tRNA-ribosyltransferase monomer (EC 2.4.2.48) from Methanocaldococcus jannaschii
Q57878: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanocaldococcus jannaschii

24% id,
50% cov

Q9HI54: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Thermoplasma acidophilum

25% id,
38% cov

Ga0059261_2566: P-type conjugative transfer protein TrbL
is similar to:
PaperBLAST

neoM / Q53U09: neamine phosphoribosyltransferase (EC 2.4.2.49) from Streptomyces fradiae

33% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory