Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 97 curated entries in PaperBLAST's database that match '2.6.1.1' as complete word(s).

These curated entries have 72 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2226: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

AAPAT_CERS1 / A3PMF8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.79 from Cereibacter sphaeroides

63% id,
99% cov

AAPAT_RHIME / Q02635: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.79 from Rhizobium meliloti
Q02635: aspartate transaminase (EC 2.6.1.1); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

62% id,
99% cov

AAT_RHIME / P58350: Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti

59% id,
97% cov

More...

Ga0059261_2265: phosphoserine aminotransferase apoenzyme (EC 2.6.1.52)
is similar to:
PaperBLAST

serC / Q8TNI1: phosphoserine aminotransferase monomer (EC 2.6.1.52; EC 2.6.1.1) from Methanosarcina acetivorans

60% id,
99% cov

Ga0059261_1688: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

AAT_ECOLI / P00509: Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Escherichia coli
AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli
aspC / P00509: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli
P00509: aspartate transaminase (EC 2.6.1.1) from Escherichia coli
A0A140ND68: aspartate transaminase (EC 2.6.1.1) from Escherichia coli
D3H0F7: aspartate transaminase (EC 2.6.1.1) from Escherichia coli
1cq7A / P00509: Aspartate aminotransferase (E.C. 2.6.1.1) complexed with c5-pyridoxal- 5p-phosphate

45% id,
100% cov

aspC / Q3IED5: aspartate aminotransferase (EC 2.6.1.1) from Pseudoalteromonas translucida

44% id,
99% cov

phhC / P43336: tyrosine aminotransferase subunit (EC 2.6.1.1) from Pseudomonas aeruginosa

44% id,
98% cov

More...

Ga0059261_1288: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

Q8YTF2: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

43% id,
94% cov

Q8YUK5: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

35% id,
99% cov

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
aspC / RF|YP_143312.1: aspartate transaminase; EC 2.6.1.1 from Thermus thermophilus

31% id,
98% cov

More...

Ga0059261_3811: branched-chain amino acid aminotransferase, group II
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli
ilvE / P0AB80: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

35% id,
94% cov

Ga0059261_1558: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
aspC / RF|YP_143312.1: aspartate transaminase; EC 2.6.1.1 from Thermus thermophilus

34% id,
96% cov

AAT_RHIML / Q06191: Aspartate aminotransferase; AAT; AspAT; Transaminase A; EC 2.6.1.1 from Rhizobium meliloti

32% id,
94% cov

Q8YMS6: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

31% id,
97% cov

More...

Ga0059261_3317: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
aspC / RF|YP_143312.1: aspartate transaminase; EC 2.6.1.1 from Thermus thermophilus

28% id,
84% cov

Q8YMS6: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

24% id,
74% cov

AAT_SYNY3 / Q55128: Aspartate aminotransferase; AAT; AspAT; EC 2.6.1.1 from Synechocystis sp.

22% id,
76% cov

More...

Ga0059261_2299: histidinol-phosphate aminotransferase
is similar to:
PaperBLAST

AAT_MUSP7 / C6C2Z3: Aspartate aminotransferase; AAT; AspAT; EC 2.6.1.1 from Musicola paradisiaca

25% id,
74% cov

Ga0059261_0947: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
is similar to:
PaperBLAST

ARO9 / P38840: aromatic amino acid aminotransferase II (EC 2.6.1.1; EC 2.6.1.58; EC 2.6.1.28) from Saccharomyces cerevisiae

21% id,
45% cov

ARO8 / P53090: aromatic amino acid/aminoadipate aminotransferase monomer (EC 2.6.1.39; EC 2.6.1.1; EC 2.6.1.28) from Saccharomyces cerevisiae

25% id,
25% cov

Ga0059261_2227: aminodeoxychorismate synthase, component I, bacterial clade
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli
ilvE / P0AB80: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

34% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory