Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 62 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 47 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3811: branched-chain amino acid aminotransferase, group II
is similar to:
PaperBLAST

RR42_RS25890: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Cupriavidus basilensis

62% id,
98% cov

ILVE_MYCS2 / A0R066: Branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 from Mycolicibacterium smegmatis
A0R066: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Mycolicibacterium smegmatis

56% id,
100% cov

ILVE_MYCTU / P9WQ75: Branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 from Mycobacterium tuberculosis
P9WQ75: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Mycobacterium tuberculosis

56% id,
96% cov

More...

Ga0059261_1688: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

42% id,
97% cov

Ga0059261_3317: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
is similar to:
PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

30% id,
91% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

29% id,
93% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

28% id,
89% cov

More...

Ga0059261_1288: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

27% id,
91% cov

Ga0059261_0947: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
is similar to:
PaperBLAST

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

24% id,
92% cov

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

26% id,
83% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

21% id,
94% cov

Ga0059261_2227: aminodeoxychorismate synthase, component I, bacterial clade
is similar to:
PaperBLAST

ilvE / A6UWA0: branched-chain amino acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Methanococcus aeolicus

25% id,
73% cov

F2L0W0: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermoproteus uzoniensis

38% id,
30% cov

BPHYT_RS16285: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Burkholderia phytofirmans

35% id,
26% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory