Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 12 curated entries in PaperBLAST's database that match '2.6.1.81'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_4131: Ornithine/acetylornithine aminotransferase
is similar to:
PaperBLAST

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

45% id,
95% cov

ASTC_SALTY / Q8ZPV2: Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium

44% id,
95% cov

A0A140N9B6: succinylornithine transaminase (EC 2.6.1.81) from Escherichia coli

43% id,
95% cov

More...

Ga0059261_3205: transaminase, acetylornithine/succinylornithine family
is similar to:
PaperBLAST

ASTC_SALTY / Q8ZPV2: Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium

45% id,
93% cov

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

44% id,
96% cov

A0A140N9B6: succinylornithine transaminase (EC 2.6.1.81) from Escherichia coli

43% id,
96% cov

More...

Ga0059261_3674: adenosylmethionine-8-amino-7-oxononanoate transaminase
is similar to:
PaperBLAST

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

30% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3339906-3341264 (frame +3) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis
Also see hits to annotated proteins above

44% id,
99% cov

ASTC_SALTY / Q8ZPV2: Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium
Also see hits to annotated proteins above

44% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory