Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 114 curated entries in PaperBLAST's database that match '2.7.1.1' as complete word(s).

These curated entries have 79 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0355: glucokinase, proteobacterial type
is similar to:
PaperBLAST

Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli
glk / P0A6V8: glucokinase (EC 2.7.1.1; EC 2.7.1.8) from Escherichia coli

34% id,
96% cov

Ga0059261_1776: Transcriptional regulator/sugar kinase
is similar to:
PaperBLAST

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

30% id,
96% cov

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

30% id,
96% cov

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

28% id,
97% cov

More...

Ga0059261_4061: Transcriptional regulator/sugar kinase
is similar to:
PaperBLAST

glk / Q8DVE8: glucokinase subunit (EC 2.7.1.1) from Streptococcus mutans

28% id,
85% cov

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

27% id,
80% cov

glcK / P54495: glucokinase (EC 2.7.1.1) from Bacillus subtilis

30% id,
59% cov

More...

Ga0059261_1775: Transcriptional regulator/sugar kinase
is similar to:
PaperBLAST

Q5RLG0: hexokinase (EC 2.7.1.1) from Thermus caldophilus

30% id,
63% cov

Q5SLJ4: hexokinase (EC 2.7.1.1) from Thermus thermophilus

30% id,
63% cov

glk / Q9X1I0: glucokinase subunit (EC 2.7.1.1) from Thermotoga maritima

28% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory