Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 67 curated entries in PaperBLAST's database that match '2.7.2.1'.

These curated entries have 45 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3309: formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 6.3.1.21; EC 2.7.2.15) from Escherichia coli

55% id,
97% cov

Ga0059261_3512: glutamate 5-kinase
is similar to:
PaperBLAST

PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli
ProB / b0242: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
proB: glutamate 5-kinase; EC 2.7.2.11 from Escherichia coli
proB / P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli

39% id,
98% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

37% id,
96% cov

G5K_LEIDO / A0A0R6Y3I5: Glutamate 5-kinase; LdG5K; Gamma-glutamyl kinase; EC 2.7.2.11 from Leishmania donovani

35% id,
87% cov

More...

Ga0059261_2551: Acetate kinase
is similar to:
PaperBLAST

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylomicrobium alcaliphilum

33% id,
98% cov

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

31% id,
97% cov

E3W769: acetate kinase (EC 2.7.2.1) from Shewanella sp.

33% id,
91% cov

More...

Ga0059261_2530: N-acetylglutamate kinase (EC 2.7.2.8)
is similar to:
PaperBLAST

LYSZ_THET2 / O50147: [LysW]-aminoadipate kinase; EC 2.7.2.17 from Thermus thermophilus

30% id,
100% cov

LYSZ_SULAC / Q4JAQ2: [LysW]-aminoadipate/[LysW]-glutamate kinase; EC 2.7.2.-; EC 2.7.2.17 from Sulfolobus acidocaldarius
lysZ / Q4JAQ2: [LysW}-glutamate/[LysW]-aminoadipate kinase (EC 2.7.2.17; EC 2.7.2.8) from Sulfolobus acidocaldarius

30% id,
100% cov

Ga0059261_2506: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41)
is similar to:
PaperBLAST

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

39% id,
58% cov

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

40% id,
56% cov

P5CS_HUMAN / P54886: Delta-1-pyrroline-5-carboxylate synthase; P5CS; Aldehyde dehydrogenase family 18 member A1; EC 2.7.2.11; EC 1.2.1.41 from Homo sapiens
ALDH18A1 / P54886: δ-1-pyrroline-5-carboxylate synthase (EC 1.2.1.41; EC 2.7.2.11) from Homo sapiens

40% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory