Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 16 curated entries in PaperBLAST's database that match ''.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3309: formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-)
is similar to:

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli

55% id,
97% cov

Ga0059261_2551: Acetate kinase
is similar to:

AckA / b2296: acetate kinase (EC; EC; EC; EC from Escherichia coli
ackA / P0A6A3: acetate kinase (EC; EC from Escherichia coli

33% id,
90% cov

ackA / A0A7H4L412: acetate kinase (EC from Desulfovibrio sp.

34% id,
87% cov

TDCD_SALTY / O06961: Propionate kinase; EC from Salmonella typhimurium
O06961: propionate kinase (EC from Salmonella enterica

34% id,
87% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory