Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 331 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 255 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2642: Beta-galactosidase
is similar to:
PaperBLAST

ADA67652.1: β-galactosidase (Tnap_1577) (EC 3.2.1.23)

34% id,
100% cov

BGAL_THEBO / Q9X6C6: Beta-galactosidase BgaT; Beta-gal; EC 3.2.1.23 from Thermus brockianus

34% id,
100% cov

BGAL_HALL2 / P94804: Beta-galactosidase BgaH; Beta-gal; EC 3.2.1.23 from Haloferax lucentense
AAB40123.2: β-galactosidase (BgaH) (EC 3.2.1.23)
P94804: beta-galactosidase (EC 3.2.1.23); beta-D-fucosidase (EC 3.2.1.38) from Haloferax lucentense

35% id,
98% cov

More...

Ga0059261_2643: Beta-galactosidase
is similar to:
PaperBLAST

BGAL1_THESP / Q8GEA9: Beta-galactosidase BgaA; Beta-gal; EC 3.2.1.23 from Thermus sp.
AAN05443.1: β-galactosidase (BgaA) (EC 3.2.1.23)

34% id,
100% cov

BGAL2_THESP / O54315: Beta-galactosidase BgaA; Beta-gal; EC 3.2.1.23 from Thermus sp.
CAB07810.1: β-galactosidase (EC 3.2.1.23)

34% id,
100% cov

ABI35985.1: β-galactosidase (EC 3.2.1.23)

34% id,
98% cov

More...

Ga0059261_2310: Beta-glucosidase-related glycosidases
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

31% id,
78% cov

Ga0059261_0769: Beta-glucosidase-related glycosidases
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

41% id,
52% cov

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

36% id,
39% cov

Ga0059261_1166: Beta-glucosidase-related glycosidases
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

26% id,
78% cov

Ga0059261_3889: Beta-glucosidase-related glycosidases
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

35% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory