Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 128 curated entries in PaperBLAST's database that match '3.2.1.28'.

These curated entries have 75 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1580: Glycosidases
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

52% id,
90% cov

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

44% id,
91% cov

Ga0059261_0579: Neutral trehalase
is similar to:
PaperBLAST

TREA_ECOLI / P13482: Periplasmic trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; Tre37A; EC 3.2.1.28 from Escherichia coli
Tre / b1197: periplasmic trehalase (EC 3.2.1.28) from Escherichia coli
AAC74281.1: α,α-trehalase (periplasmic) (TreA;OsmA) (Tre37A) (EC 3.2.1.28)
treA / P13482: periplasmic trehalase (EC 3.2.1.28) from Escherichia coli
P13482: alpha,alpha-trehalase (EC 3.2.1.28) from Escherichia coli

52% id,
88% cov

Q3BXX2: alpha,alpha-trehalase (EC 3.2.1.28) from Xanthomonas campestris

51% id,
88% cov

AO356_24205: Alpha,alpha-trehalase (EC 3.2.1.28) from Pseudomonas fluorescens

49% id,
91% cov

More...

Ga0059261_1581: Glycosidases
is similar to:
PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

42% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1651780-1653639 (frame -3) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae
Also see hits to annotated proteins above

51% id,
91% cov

605311-607296 (frame +1) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

AO356_24205: Alpha,alpha-trehalase (EC 3.2.1.28) from Pseudomonas fluorescens
Also see hits to annotated proteins above

48% id,
96% cov

TREA_RABIT / P19813: Trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Oryctolagus cuniculus
AAA63460.1: trehalase (TreH;TreA) (EC 3.2.1.28)
Also see hits to annotated proteins above

34% id,
92% cov

D2KHJ0: alpha,alpha-trehalase (EC 3.2.1.28) from Spodoptera litura
Also see hits to annotated proteins above

31% id,
92% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory