Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 14 curated entries in PaperBLAST's database that match '3.2.1.48' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1580: Glycosidases
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

52% id,
90% cov

Ga0059261_1778: Beta-fructosidases (levanase/invertase)
is similar to:
PaperBLAST

Pf1N1B4_5116: Sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

32% id,
99% cov

Pf6N2E2_1650: Sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

33% id,
96% cov

AO356_28590: sucrose alpha-glucosidase (EC 3.2.1.48) from Pseudomonas fluorescens

32% id,
97% cov

Ga0059261_2312: Alpha-glucosidases, family 31 of glycosyl hydrolases
is similar to:
PaperBLAST

SUIS_HUMAN / P14410: Sucrase-isomaltase, intestinal; EC 3.2.1.48; EC 3.2.1.10 from Homo sapiens
P14410: oligo-1,6-glucosidase (EC 3.2.1.10); sucrose alpha-glucosidase (EC 3.2.1.48) from Homo sapiens

27% id,
41% cov

AAT18166.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

27% id,
41% cov

BAA25370.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)

27% id,
37% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1651780-1653639 (frame -3) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae
Also see hits to annotated proteins above

51% id,
91% cov

2421315-2424938 (frame -1) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

AAT18166.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)
Also see hits to annotated proteins above

27% id,
38% cov

SUIS_HUMAN / P14410: Sucrase-isomaltase, intestinal; EC 3.2.1.48; EC 3.2.1.10 from Homo sapiens
P14410: oligo-1,6-glucosidase (EC 3.2.1.10); sucrose alpha-glucosidase (EC 3.2.1.48) from Homo sapiens
Also see hits to annotated proteins above

27% id,
38% cov

BAA25370.1: sucrase-isomaltase (SI) (EC 3.2.1.10|3.2.1.48)
Also see hits to annotated proteins above

29% id,
19% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory