Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 46 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1159: Asparaginase
is similar to:

P37595: beta-aspartyl-peptidase (EC; asparaginase (EC from Escherichia coli

48% id,
98% cov

CCNA_00096: asparaginase (EC from Caulobacter crescentus

47% id,
99% cov

Q5JHT1: asparaginase (EC from Thermococcus kodakarensis

41% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2295988-2296638 (frame +1) on Ga0059261_unitig_0_quiver.1
is similar to:

LPP60_RAT / O88202: 60 kDa lysophospholipase; Lysophospholipase-transacylase; EC; EC; EC from Rattus norvegicus

27% id,
21% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory