Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6'.

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1644: Predicted phosphosugar isomerases
is similar to:
PaperBLAST

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

100% id,
100% cov

CCNA_00453: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Caulobacter crescentus

61% id,
95% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Burkholderia phytofirmans

49% id,
100% cov

More...

Ga0059261_3665: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
is similar to:
PaperBLAST

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

37% id,
85% cov

SO3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella oneidensis

31% id,
99% cov

Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella sp.

31% id,
99% cov

More...

Ga0059261_4087: Uncharacterized proteins, LmbE homologs
is similar to:
PaperBLAST

CA265_RS21925: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Pedobacter sp.

26% id,
14% cov

Ga0059261_3090: Uncharacterized proteins, LmbE homologs
is similar to:
PaperBLAST

CA265_RS21925: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Pedobacter sp.

38% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory