Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3753: Diaminopimelate decarboxylase
is similar to:
PaperBLAST

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

30% id,
74% cov

DCOR_YEAST / P08432: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Saccharomyces cerevisiae
SPE1 / P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae
P08432: ornithine decarboxylase (EC 4.1.1.17) from Saccharomyces cerevisiae

44% id,
10% cov

SPE1 / GB|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans

39% id,
11% cov

Ga0059261_2051: diaminopimelate decarboxylase
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

25% id,
80% cov

DCOR_MOUSE / P00860: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Mus musculus
P00860: ornithine decarboxylase (EC 4.1.1.17) from Mus musculus

24% id,
76% cov

SPE1 / GB|AAC49877.1: ornithine decarboxylase (ODC); EC 4.1.1.17 from Candida albicans

29% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory