Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 55 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2051: diaminopimelate decarboxylase
is similar to:

O25176: arginine decarboxylase (EC from Helicobacter pylori

26% id,
51% cov

Q9M7K9: arginine decarboxylase (EC from Nicotiana tabacum

21% id,
57% cov

B3Y023: arginine decarboxylase (EC from Prunus persica

25% id,
46% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory