Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 27 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2051: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

100% id,
100% cov

Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae

46% id,
100% cov

BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron

42% id,
94% cov

More...

Ga0059261_4188: pyridoxal-dependent decarboxylase, exosortase A system-associated
is similar to:
PaperBLAST

DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus

29% id,
96% cov

DCDA_MYCTU / P9WIU7: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis
P9WIU7: diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis

29% id,
91% cov

Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis

31% id,
85% cov

More...

Ga0059261_2519: aspartate kinase (EC 2.7.2.4)
is similar to:
PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

29% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory