Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1986: Glycine/serine hydroxymethyltransferase
is similar to:

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC; EC from Hydrogenobacter thermophilus

58% id,
96% cov

P0A825: low-specificity L-threonine aldolase (EC from Escherichia coli

56% id,
98% cov

Ga0059261_2028: L-threonine aldolase (EC
is similar to:

A0T1V9: low-specificity L-threonine aldolase (EC from Sinorhizobium arboris

47% id,
93% cov

O50584: low-specificity L-threonine aldolase (EC from Pseudomonas sp.

45% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory