Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0356: Entner-Doudoroff aldolase
is similar to:

Kga / b1850: KHG/KDPG aldolase (EC; EC; EC; EC from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC; EC; EC from Escherichia coli

51% id,
97% cov

kdgA / P38448: 2-dehydro-3-deoxy-D-gluconate-6-phosphate aldolase (EC from Dickeya dadantii

51% id,
97% cov

TM0066 / Q9WXS1: 4-hydroxy-2-oxoglutarate aldolase (EC; EC from Thermotoga maritima

34% id,
90% cov


Ga0059261_1625: 2-keto-3-deoxy-6-phosphogluconate aldolase
is similar to:

YidU / b4477: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC; EC from Escherichia coli
dgoA / Q6BF16: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC from Escherichia coli

49% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory