Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 52 curated entries in PaperBLAST's database that match '4.2.1.12'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0354: 6-phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

63% id,
100% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

57% id,
99% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

56% id,
99% cov

Ga0059261_0238: tryptophan synthase, beta subunit
is similar to:
PaperBLAST

trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis
Q9YGB0: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis

59% id,
98% cov

trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima

60% id,
97% cov

TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli
trpB / P0A879: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli

56% id,
97% cov

More...

Ga0059261_4216: Dihydroxyacid dehydratase/phosphogluconate dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

32% id,
88% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

31% id,
84% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

31% id,
82% cov

Ga0059261_2649: Dihydroxyacid dehydratase/phosphogluconate dehydratase
is similar to:
PaperBLAST

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

29% id,
90% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

27% id,
88% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

27% id,
84% cov

Ga0059261_0239: tryptophan synthase, alpha chain (EC 4.2.1.20)
is similar to:
PaperBLAST

A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis

36% id,
38% cov

Ga0059261_3665: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
is similar to:
PaperBLAST

G8UQI0: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Tannerella forsythia

29% id,
43% cov

Ga0059261_1644: Predicted phosphosugar isomerases
is similar to:
PaperBLAST

P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae

24% id,
35% cov

Ga0059261_2962: Pectic acid lyase
is similar to:
PaperBLAST

LUP1_ARATH / Q9C5M3: Lupeol synthase 1; AtLUP1; (S)-2,3-epoxysqualene synthase; Beta-amyrin synthase; Germanicol synthase; Lupan-3-beta,20-diol synthase; EC 5.4.99.41; EC 4.2.1.128; EC 5.4.99.39; EC 5.4.99.34 from Arabidopsis thaliana
Q9C5M3: lupan-3beta,20-diol synthase (EC 4.2.1.128); lupeol synthase (EC 5.4.99.41) from Arabidopsis thaliana

33% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory