Searching in Sphingomonas koreensis DSMZ 15582 (Korea)
Found 6 curated entries in PaperBLAST's database that match '4.2.1.140' as complete word(s).
These curated entries have 3 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query
| Ga0059261_2635: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily is similar to: | PaperBLAST |
GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus | 26% id, 89% cov |
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli | 29% id, 71% cov |
GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus | 27% id, 71% cov |
| Ga0059261_1669: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily is similar to: | PaperBLAST |
GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus | 21% id, 89% cov |
| Ga0059261_1631: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily is similar to: | PaperBLAST |
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli | 33% id, 55% cov |
GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus | 26% id, 55% cov |
GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus | 32% id, 34% cov |
| Ga0059261_2661: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily is similar to: | PaperBLAST |
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli | 28% id, 50% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1711673-1712956 (frame +2) on Ga0059261_unitig_0_quiver.1 is similar to: | PaperBLAST |
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli | 31% id, 99% cov |
Lawrence Berkeley National Laboratory