Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.6' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2649: Dihydroxyacid dehydratase/phosphogluconate dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

43% id,
99% cov

Ga0059261_4216: Dihydroxyacid dehydratase/phosphogluconate dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

32% id,
92% cov

Ga0059261_0354: 6-phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

30% id,
87% cov

Ga0059261_2635: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus

26% id,
89% cov

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

31% id,
70% cov

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

31% id,
70% cov

More...

Ga0059261_1669: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus

21% id,
89% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

24% id,
72% cov

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

22% id,
74% cov

More...

Ga0059261_1631: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

32% id,
56% cov

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

33% id,
55% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

36% id,
49% cov

More...

Ga0059261_2661: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

28% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1711673-1712956 (frame +2) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli
Also see hits to annotated proteins above

31% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory