Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 5 curated entries in PaperBLAST's database that match '4.2.1.83' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0527: Predicted metal-dependent hydrolase of the TIM-barrel fold
is similar to:
PaperBLAST

proH / Q9AQI1: subunit of 4-oxalomesaconate hydratase (EC 4.2.1.83) from Pseudomonas straminea

64% id,
100% cov

pmdE / Q93PS9: 4-carboxy-2-hydroxymuconate hydratase (EC 4.2.1.83) from Comamonas testosteroni
Q93PS9: 4-oxalomesaconate hydratase (EC 4.2.1.83) from Comamonas testosteroni

63% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory