Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 16 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_4216: Dihydroxyacid dehydratase/phosphogluconate dehydratase is similar to:	PaperBLAST
ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis	49% id, 96% cov
Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus	47% id, 99% cov
ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator	44% id, 99% cov
ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus	43% id, 100% cov
ILVC_ASPFU / Q4X099: Dihydroxy-acid dehydratase ilvC, mitochondrial; DHAD ilvC; EC 4.2.1.9 from Aspergillus fumigatus	46% id, 93% cov
ILV3_YEAST / P39522: Dihydroxy-acid dehydratase, mitochondrial; DAD; EC 4.2.1.9 from Saccharomyces cerevisiae	44% id, 93% cov
ILVD_ARATH / Q9LIR4: Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana Q9LIR4: dihydroxy-acid dehydratase (EC 4.2.1.9) from Arabidopsis thaliana	42% id, 92% cov
A0A481UJA7: dihydroxy-acid dehydratase (EC 4.2.1.9) from Hevea brasiliensis	42% id, 90% cov
ILVD_RHIJ3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium johnstonii	34% id, 74% cov
Q8NQZ9: dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum	38% id, 63% cov
ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli	37% id, 62% cov
ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides	38% id, 58% cov
ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides	47% id, 34% cov
ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli	51% id, 31% cov
Q8NQZ9: dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum	44% id, 34% cov
More...

Ga0059261_2649: Dihydroxyacid dehydratase/phosphogluconate dehydratase is similar to:	PaperBLAST
ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus	35% id, 95% cov
ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis	35% id, 91% cov
Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus	32% id, 96% cov
ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator	32% id, 91% cov
ILVD_ARATH / Q9LIR4: Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana Q9LIR4: dihydroxy-acid dehydratase (EC 4.2.1.9) from Arabidopsis thaliana	33% id, 82% cov
ILVC_ASPFU / Q4X099: Dihydroxy-acid dehydratase ilvC, mitochondrial; DHAD ilvC; EC 4.2.1.9 from Aspergillus fumigatus	32% id, 85% cov
A0A481UJA7: dihydroxy-acid dehydratase (EC 4.2.1.9) from Hevea brasiliensis	32% id, 82% cov
ILV3_YEAST / P39522: Dihydroxy-acid dehydratase, mitochondrial; DAD; EC 4.2.1.9 from Saccharomyces cerevisiae	28% id, 91% cov
ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides	33% id, 54% cov
ILVD_RHIJ3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium johnstonii	33% id, 54% cov
Q8NQZ9: dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum	32% id, 54% cov
ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli	33% id, 53% cov
ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli	28% id, 42% cov
ILVD_RHIJ3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium johnstonii	31% id, 33% cov
Q8NQZ9: dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum	34% id, 27% cov
More...

Ga0059261_0354: 6-phosphogluconate dehydratase (EC 4.2.1.12) is similar to:	PaperBLAST
ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus	32% id, 95% cov
Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus	32% id, 94% cov
ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator	29% id, 99% cov
ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis	31% id, 92% cov
ILV3_YEAST / P39522: Dihydroxy-acid dehydratase, mitochondrial; DAD; EC 4.2.1.9 from Saccharomyces cerevisiae	29% id, 99% cov
ILVD_RHIJ3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium johnstonii	30% id, 92% cov
A0A481UJA7: dihydroxy-acid dehydratase (EC 4.2.1.9) from Hevea brasiliensis	30% id, 88% cov
ILVD_ARATH / Q9LIR4: Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana Q9LIR4: dihydroxy-acid dehydratase (EC 4.2.1.9) from Arabidopsis thaliana	29% id, 88% cov
ILVC_ASPFU / Q4X099: Dihydroxy-acid dehydratase ilvC, mitochondrial; DHAD ilvC; EC 4.2.1.9 from Aspergillus fumigatus	31% id, 77% cov
Q8NQZ9: dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum	30% id, 65% cov
ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli	29% id, 67% cov
ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides	32% id, 57% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory