Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 14 curated entries in PaperBLAST's database that match '4.2.3.4' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3591: 3-dehydroquinate synthase (EC 4.2.3.4)
is similar to:
PaperBLAST

AROB_ECOLI / P07639: 3-dehydroquinate synthase; DHQS; EC 4.2.3.4 from Escherichia coli
AroB / b3389: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli
aroB / P07639: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli
P07639: 3-dehydroquinate synthase (EC 4.2.3.4) from Escherichia coli

46% id,
96% cov

Q3M4V2: 3-dehydroquinate synthase (EC 4.2.3.4) from Trichormus variabilis

41% id,
99% cov

DHQS_ACTCC / U3KRF2: 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4 from Actinidia chinensis

47% id,
76% cov

More...

Ga0059261_2194: shikimate dehydrogenase (EC 1.1.1.25)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

28% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory