Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 41 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0213: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

54% id,
100% cov

DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti
Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti

51% id,
100% cov

Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae

47% id,
99% cov

More...

Ga0059261_2545: dihydrodipicolinate reductase (EC 1.3.1.26)
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

35% id,
66% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory