Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 13 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2394: diaminopimelate epimerase (EC
is similar to:

DAPF_BACAN / Q81XR2: Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC from Bacillus anthracis

32% id,
88% cov

DAPF_ARATH / Q9LFG2: Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC from Arabidopsis thaliana
Q9LFG2: diaminopimelate epimerase (EC from Arabidopsis thaliana

34% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory