Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2663: Domain of unknown function (DUF718)
is similar to:

FUCM_XANCP / Q8P3K1: L-fucose mutarotase; Fucose 1-epimerase; Type-2 mutarotase; EC from Xanthomonas campestris

45% id,
92% cov

BT1276: L-fucose mutarotase FucU (EC from Bacteroides thetaiotaomicron

33% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory