Curated BLAST for Genomes


Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 12 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3985: methylmalonyl-CoA epimerase (EC
is similar to:

EPI_CERS4 / Q3IZP4: Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC from Cereibacter sphaeroides

53% id,
99% cov

MCEE_HUMAN / Q96PE7: Methylmalonyl-CoA epimerase, mitochondrial; DL-methylmalonyl-CoA racemase; EC from Homo sapiens
MCEE / Q96PE7: methylmalonyl CoA epimerase (EC from Homo sapiens
Q96PE7: methylmalonyl-CoA epimerase (EC from Homo sapiens

49% id,
77% cov

Ga0059261_2984: 4-hydroxyphenylpyruvate dioxygenase
is similar to:

MCE_PYRHO / O58010: Methylmalonyl-CoA epimerase; DL-methylmalonyl-CoA racemase; EC from Pyrococcus horikoshii

29% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory