Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 8 curated entries in PaperBLAST's database that match '5.3.1.12' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_2969: Glucuronate isomerase
is similar to:
PaperBLAST

UXAC_THEMA / Q9WXR9: Uronate isomerase; D-GalA/D-TagA isomerase; D-GlcA/D-FruA isomerase; Glucuronate isomerase; Hexuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Thermotoga maritima
uxaC / Q9WXR9: hexuronate isomerase monomer (EC 5.3.1.12) from Thermotoga maritima

27% id,
96% cov

CA265_RS19870: Glucuronate isomerase (EC 5.3.1.12) from Pedobacter sp.

26% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory