Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.2' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_3173: adenylosuccinate lyase
is similar to:
PaperBLAST

RR42_RS32055: 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) from Cupriavidus basilensis

32% id,
86% cov

pcaB2 / Q2HNY9: 3-carboxymuconate lactonizing enzyme type 2 (EC 5.5.1.2) from Hydrogenophaga intermedia

28% id,
89% cov

Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens

29% id,
73% cov

Ga0059261_2049: argininosuccinate lyase
is similar to:
PaperBLAST

Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens

26% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory