Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 193 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 146 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1313: acetyl-coenzyme A synthetase (EC 6.2.1.1)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

66% id,
98% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

65% id,
98% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

63% id,
98% cov

More...

Ga0059261_0514: Acyl-CoA synthetase (NDP forming)
is similar to:
PaperBLAST

ferA / Q8RR27: feruloyl-CoA synthetase (EC 6.2.1.12; EC 6.2.1.34) from Sphingomonas paucimobilis

61% id,
98% cov

Q5JIA9: acetate-CoA ligase (ADP-forming) (subunit 1/2) (EC 6.2.1.13) from Thermococcus kodakarensis

37% id,
91% cov

pauA / Q9ZER2: pimeloyl-CoA synthetase monomer (EC 6.2.1.14) from Pseudomonas mendocina

34% id,
97% cov

More...

Ga0059261_0771: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

56% id,
97% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

31% id,
98% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

32% id,
96% cov

More...

Ga0059261_2857: Acyl-CoA synthetase (NDP forming)
is similar to:
PaperBLAST

pauA / Q9ZER2: pimeloyl-CoA synthetase monomer (EC 6.2.1.14) from Pseudomonas mendocina

43% id,
97% cov

acd / A9WDH8: acetate—CoA ligase (ADP-forming) monomer (EC 6.2.1.13) from Chloroflexus aurantiacus

36% id,
99% cov

ACDB2_PYRFU / Q8TZY8: Acetate--CoA ligase [ADP-forming] II subunit beta; ADP-forming acetyl coenzyme A synthetase II subunit beta; ACS II subunit beta; EC 6.2.1.13 from Pyrococcus furiosus

38% id,
91% cov

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Ga0059261_2865: Acyl-CoA synthetase (NDP forming)
is similar to:
PaperBLAST

ACDB1_PYRFU / E7FHP1: Acetate--CoA ligase [ADP-forming] I subunit beta; ADP-forming acetyl coenzyme A synthetase I subunit beta; ACS I subunit beta; EC 6.2.1.13 from Pyrococcus furiosus
acdB / E7FHP1: acetate-CoA ligase β subunit (EC 6.2.1.13) from Pyrococcus furiosus

43% id,
91% cov

Q5JIA9: acetate-CoA ligase (ADP-forming) (subunit 1/2) (EC 6.2.1.13) from Thermococcus kodakarensis

42% id,
90% cov

ACDB2_PYRFU / Q8TZY8: Acetate--CoA ligase [ADP-forming] II subunit beta; ADP-forming acetyl coenzyme A synthetase II subunit beta; ACS II subunit beta; EC 6.2.1.13 from Pyrococcus furiosus

41% id,
90% cov

More...

Ga0059261_3832: Acyl-CoA synthetase (NDP forming)
is similar to:
PaperBLAST

acd / A9WDH8: acetate—CoA ligase (ADP-forming) monomer (EC 6.2.1.13) from Chloroflexus aurantiacus

38% id,
99% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

37% id,
100% cov

ACDA2_PYRFU / Q8U3D6: Acetate--CoA ligase [ADP-forming] II subunit alpha; ADP-forming acetyl coenzyme A synthetase II subunit alpha; ACS II subunit alpha; EC 6.2.1.13 from Pyrococcus furiosus

37% id,
98% cov

More...

Ga0059261_0835: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
93% cov

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

31% id,
93% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

32% id,
92% cov

More...

Ga0059261_0337: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

32% id,
94% cov

CNL / J9ZU73: cinnamate:CoA ligase (EC 6.2.1.12) from Hypericum calycinum

31% id,
91% cov

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

30% id,
93% cov

More...

Ga0059261_1004: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

31% id,
97% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

31% id,
94% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

32% id,
93% cov

More...

Ga0059261_1340: succinyl-CoA synthetase, alpha subunit
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

36% id,
81% cov

Ga0059261_2791: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

4CL2_TOBAC / O24146: 4-coumarate--CoA ligase 2; 4CL 2; Nt4CL-19; Nt4CL-2; 4-coumaroyl-CoA synthase 2; Caffeate--CoA ligase; Cinnamate--CoA ligase; Ferulate--CoA ligase; EC 6.2.1.12; EC 6.2.1.-; EC 6.2.1.34 from Nicotiana tabacum
O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

30% id,
94% cov

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

30% id,
93% cov

4CL1_PETHY / I3PB37: 4-coumarate:CoA ligase 1; Ph-4CL1; Ph4CL1; (E)-caffeate:CoA ligase 4CL1; Benzoate:CoA ligase 4CL1; Trans-cinnamate:CoA ligase 4CL1; Trans-ferulate:CoA ligase 4CL1; EC 6.2.1.12; EC 6.2.1.-; EC 6.2.1.25 from Petunia hybrida

29% id,
94% cov

More...

Ga0059261_0868: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

30% id,
93% cov

4CL1 / A0A4Y5UJ50: 4-coumarate:CoA ligase (EC 6.2.1.12; EC 6.2.1.34) from Avena sativa

29% id,
95% cov

4CL3_ORYSJ / Q6ETN3: 4-coumarate--CoA ligase 3; 4CL 3; Os4CL3; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 3; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ETN3: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

29% id,
94% cov

More...

Ga0059261_2278: succinyl-CoA synthetase, beta subunit
is similar to:
PaperBLAST

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

31% id,
87% cov

Ga0059261_2809: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

4CL3_ORYSJ / Q6ETN3: 4-coumarate--CoA ligase 3; 4CL 3; Os4CL3; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 3; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ETN3: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

28% id,
95% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

29% id,
90% cov

CCL1_HUMLU / M4ISH0: 4-coumarate--CoA ligase CCL1; HlCCL1; EC 6.2.1.12 from Humulus lupulus

28% id,
90% cov

More...

Ga0059261_4187: acyl-CoA ligase (AMP-forming), exosortase A-associated
is similar to:
PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

27% id,
95% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

27% id,
90% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

27% id,
90% cov

More...

Ga0059261_1467: Long-chain acyl-CoA synthetases (AMP-forming)
is similar to:
PaperBLAST

ACSL1_RAT / P18163: Long-chain-fatty-acid--CoA ligase 1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain-fatty-acid--CoA ligase, liver isozyme; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Rattus norvegicus

29% id,
88% cov

ACSL1_HUMAN / P33121: Long-chain-fatty-acid--CoA ligase 1; Acyl-CoA synthetase 1; ACS1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain acyl-CoA synthetase 2; LACS 2; Long-chain fatty acid-CoA ligase 2; Palmitoyl-CoA ligase 1; Palmitoyl-CoA ligase 2; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Homo sapiens
ACSL1 / P33121: long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3; EC 6.2.1.15) from Homo sapiens

31% id,
84% cov

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

30% id,
84% cov

More...

Ga0059261_3424: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

25% id,
92% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

25% id,
87% cov

B3TJI5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Ruta graveolens

25% id,
86% cov

More...

Ga0059261_2788: AMP-binding enzyme C-terminal domain/AMP-binding enzyme
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

33% id,
41% cov

4CLL1_ARATH / Q9LQ12: 4-coumarate--CoA ligase-like 1; 4-coumarate--CoA ligase isoform 10; At4CL10; EC 6.2.1.12 from Arabidopsis thaliana

33% id,
40% cov

S4WX39: 4-coumarate-CoA ligase (EC 6.2.1.12) from Ocimum basilicum

33% id,
36% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2899730-2901334 (frame +2) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

L7Z3F8: 4-coumarate-CoA ligase (EC 6.2.1.12) from Lonicera japonica
Also see hits to annotated proteins above

29% id,
98% cov

4CL2 / P14913: 4-coumarate--CoA ligase 1 (EC 6.2.1.12) from Petroselinum crispum
P14913: 4-coumarate-CoA ligase (EC 6.2.1.12) from Petroselinum crispum
Also see hits to annotated proteins above

29% id,
97% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia
Also see hits to annotated proteins above

29% id,
97% cov

More...

1551260-1553065 (frame -2) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus
Also see hits to annotated proteins above

29% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory