Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 13 curated entries in PaperBLAST's database that match '6.2.1.30' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0835: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

32% id,
89% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

32% id,
87% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

31% id,
83% cov

Ga0059261_1004: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
92% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
89% cov

Ga0059261_2791: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
94% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
91% cov

Ga0059261_0771: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
95% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
90% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
88% cov

Ga0059261_0868: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
95% cov

Ga0059261_0337: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

24% id,
95% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
64% cov

Ga0059261_4187: acyl-CoA ligase (AMP-forming), exosortase A-associated
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
86% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
82% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
74% cov

Ga0059261_2809: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
82% cov

Ga0059261_1467: Long-chain acyl-CoA synthetases (AMP-forming)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

24% id,
40% cov

Ga0059261_3424: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
27% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

35% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory