Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 3 curated entries in PaperBLAST's database that match 'anthranilate synthase component II' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0926: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

61% id,
97% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

53% id,
99% cov

trpG: anthranilate synthase component II; EC 4.1.3.27 from Leptospira biflexa

40% id,
99% cov

Ga0059261_4243: carbamoyl-phosphate synthase, small subunit
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

33% id,
88% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

31% id,
87% cov

Ga0059261_0006: carbamoyl-phosphate synthase, small subunit
is similar to:
PaperBLAST

trpG / AAD09117.1: anthranilate synthase component II from Rhodobacter sphaeroides

33% id,
88% cov

trpG / BAC65123.1: anthranilate synthase component II from Burkholderia multivorans

31% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory