Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_0007: carbamoyl-phosphate synthase, large subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

47% id,
50% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

35% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4395051-4398482 (frame +3) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum
Also see hits to annotated proteins above

47% id,
39% cov

4395142-4395765 (frame +1) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum
Also see hits to annotated proteins above

37% id,
18% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory