Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1901: Sugar phosphate permease
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

27% id,
92% cov

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

26% id,
93% cov

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

25% id,
90% cov

Ga0059261_2045: Sugar phosphate permease
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

23% id,
98% cov

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

22% id,
94% cov

Ga0059261_0886: Arabinose efflux permease
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans

26% id,
85% cov

Ga0059261_0854: Arabinose efflux permease
is similar to:
PaperBLAST

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

25% id,
84% cov

Ga0059261_0511: Arabinose efflux permease
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

24% id,
87% cov

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

23% id,
65% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

26% id,
39% cov

Ga0059261_3322: Arabinose efflux permease
is similar to:
PaperBLAST

PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae

24% id,
78% cov

Ga0059261_1891: MFS transporter, sugar porter (SP) family
is similar to:
PaperBLAST

H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila

23% id,
75% cov

Ga0059261_2641: Sugar phosphate permease
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

28% id,
47% cov

Ga0059261_4005: drug resistance transporter, EmrB/QacA subfamily
is similar to:
PaperBLAST

BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis

28% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

926766-928448 (frame +3) on Ga0059261_unitig_0_quiver.1
is similar to:
PaperBLAST

BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans
Also see hits to annotated proteins above

26% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory