Searching in Sphingomonas koreensis DSMZ 15582 (Korea)
Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).
These curated entries have 6 distinct sequences.
Running ublast with E ≤ 0.01
Found 9 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query
Ga0059261_1901: Sugar phosphate permease is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 27% id, 92% cov |
PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae | 26% id, 93% cov |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 25% id, 90% cov |
Ga0059261_2045: Sugar phosphate permease is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 23% id, 98% cov |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 22% id, 94% cov |
Ga0059261_0886: Arabinose efflux permease is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 26% id, 85% cov |
Ga0059261_0854: Arabinose efflux permease is similar to: | PaperBLAST |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 25% id, 84% cov |
Ga0059261_0511: Arabinose efflux permease is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 24% id, 87% cov |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 23% id, 65% cov |
BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis | 26% id, 39% cov |
Ga0059261_3322: Arabinose efflux permease is similar to: | PaperBLAST |
PS417_07260: 2-deoxy-D-ribonate transporter 2 from Pseudomonas simiae | 24% id, 78% cov |
Ga0059261_1891: MFS transporter, sugar porter (SP) family is similar to: | PaperBLAST |
H281DRAFT_00642: 2-deoxy-D-ribonate transporter from Paraburkholderia bryophila | 23% id, 75% cov |
Ga0059261_2641: Sugar phosphate permease is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 28% id, 47% cov |
Ga0059261_4005: drug resistance transporter, EmrB/QacA subfamily is similar to: | PaperBLAST |
BWI76_RS23725: 2-deoxy-D-ribonate transporter 2 from Klebsiella michiganensis | 28% id, 36% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
926766-928448 (frame +3) on Ga0059261_unitig_0_quiver.1 is similar to: | PaperBLAST |
BPHYT_RS04765: 2-deoxy-D-ribonate transporter from Burkholderia phytofirmans | 26% id, 94% cov |
Lawrence Berkeley National Laboratory