Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingomonas koreensis DSMZ 15582 (Korea)

Found 9 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sphingomonas koreensis DSMZ 15582, or try another query

Ga0059261_1048: imidazoleglycerol phosphate synthase, cyclase subunit
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

62% id,
99% cov

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

53% id,
98% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

53% id,
98% cov

More...

Ga0059261_3125: Imidazoleglycerol-phosphate synthase
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

41% id,
90% cov

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

37% id,
90% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

37% id,
90% cov

More...

Ga0059261_1047: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16)
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

28% id,
94% cov

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

26% id,
94% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

26% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory