Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 15 curated entries in PaperBLAST's database that match '1.1.2.8' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS13270: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:		 PaperBLAST

B1N7J5: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Pseudomonas putida

 23% id,
98% cov

B1N7J0: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Pseudomonas putida

 28% id,
62% cov

QEDH_PSEPU / A8R3S4: Quinoprotein ethanol dehydrogenase; QEDH; Quinoprotein alcohol dehydrogenase (cytochrome c); Quinoprotein alcohol dehydrogenase (cytochrome c550); Quinoprotein alcohol dehydrogenase ADH I; ADH I; EC 1.1.2.8 from Pseudomonas putida

 28% id,
62% cov

More...

BWI76_RS04950: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:		 PaperBLAST

B1N7J0: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Pseudomonas putida

 27% id,
69% cov

Q88JH5: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Pseudomonas putida

 26% id,
68% cov

QEDH_PSEPU / A8R3S4: Quinoprotein ethanol dehydrogenase; QEDH; Quinoprotein alcohol dehydrogenase (cytochrome c); Quinoprotein alcohol dehydrogenase (cytochrome c550); Quinoprotein alcohol dehydrogenase ADH I; ADH I; EC 1.1.2.8 from Pseudomonas putida

 26% id,
65% cov

More...

BWI76_RS16705: glucose dehydrogenase
is similar to:		 PaperBLAST

C9K501: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus

 31% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory