Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 6 curated entries in PaperBLAST's database that match '1.1.3.21' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS26190: glycerol-3-phosphate dehydrogenase
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

32% id,
59% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

32% id,
55% cov

BWI76_RS19965: sn-glycerol-3-phosphate dehydrogenase subunit A
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

29% id,
55% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis

26% id,
60% cov

BWI76_RS17735: D-amino acid dehydrogenase small subunit
is similar to:
PaperBLAST

GLPO_MYCPN / P75063: Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae

46% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4181699-4183345 (frame +2) on NZ_CP020657
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus
Also see hits to annotated proteins above

29% id,
57% cov

Q833L7: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis
Also see hits to annotated proteins above

26% id,
62% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory