Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS13700: catechol 1,2-dioxygenase
is similar to:
PaperBLAST

AO353_23525: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas fluorescens

58% id,
99% cov

catA / A0F0B5: catechol-1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
A0F0B5: catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei

58% id,
96% cov

PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae

56% id,
100% cov

More...

BWI76_RS13290: protocatechuate 3,4-dioxygenase subunit beta
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

33% id,
59% cov

BWI76_RS13285: protocatechuate 3,4-dioxygenase subunit alpha
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

29% id,
67% cov

PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae

26% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory