Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 11 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS21475: bifunctional chorismate mutase/prephenate dehydrogenase
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

91% id,
100% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

59% id,
98% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

43% id,
91% cov

BWI76_RS21465: bifunctional chorismate mutase/prephenate dehydratase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

29% id,
55% cov

BWI76_RS10615: chorismate mutase
is similar to:
PaperBLAST

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

35% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4496564-4497745 (frame +2) on NZ_CP020657
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus
Also see hits to annotated proteins above

29% id,
57% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory