Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 108 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 87 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS04890: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

97% id,
100% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

43% id,
92% cov

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

42% id,
91% cov

More...

BWI76_RS23875: glycine cleavage system protein H
is similar to:
PaperBLAST

P0A6T9: glycine cleavage system (subunit 2/3) (EC 1.4.1.27) from Escherichia coli

92% id,
100% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

42% id,
94% cov

GCSH / A8HYD5: glycine cleavage system H protein (EC 1.4.1.27) from Chlamydomonas reinhardtii

51% id,
75% cov

More...

BWI76_RS23870: glycine dehydrogenase (aminomethyl-transferring)
is similar to:
PaperBLAST

P33195: glycine cleavage system (subunit 1/3) (EC 1.4.1.27) from Escherichia coli

91% id,
100% cov

Q94B78: glycine cleavage system (subunit 4/5) (EC 1.4.1.27) from Arabidopsis thaliana

55% id,
92% cov

P23378: glycine cleavage system (subunit 4/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

54% id,
93% cov

More...

BWI76_RS23880: glycine cleavage system protein T
is similar to:
PaperBLAST

P27248: glycine cleavage system (subunit 3/3) (EC 1.4.1.27) from Escherichia coli

89% id,
100% cov

Q5NHP0: glycine cleavage system (EC 1.4.1.27) from Francisella tularensis

47% id,
99% cov

Q9WY54: glycine cleavage system (EC 1.4.1.27) from Thermotoga maritima

40% id,
98% cov

More...

BWI76_RS11610: glutamate dehydrogenase
is similar to:
PaperBLAST

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from [Clostridium] symbiosum

53% id,
99% cov

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

53% id,
99% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

33% id,
94% cov

More...

BWI76_RS13195: glutamate dehydrogenase
is similar to:
PaperBLAST

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

53% id,
98% cov

gluD / GB|AAA62756.1: NAD-specific glutamate dehydrogenase; EC 1.4.1.2 from Clostridium difficile
P27346: glutamate dehydrogenase (EC 1.4.1.2) from Clostridioides difficile

49% id,
97% cov

DHE2_PEPAS / P28997: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Peptoniphilus asaccharolyticus
gdhA / P28997: NAD-glutamate dehydrogenase subunit (EC 1.4.1.2) from Peptoniphilus asaccharolyticus
P28997: glutamate dehydrogenase (EC 1.4.1.2) from Peptoniphilus asaccharolyticus

49% id,
93% cov

More...

BWI76_RS14145: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

42% id,
93% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

41% id,
92% cov

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

35% id,
99% cov

More...

BWI76_RS26685: glutathione-disulfide reductase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

31% id,
98% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

30% id,
93% cov

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum

31% id,
90% cov

More...

BWI76_RS00870: NAD(P)(+) transhydrogenase
is similar to:
PaperBLAST

P72740: glycine cleavage system (subunit 2/2) (EC 1.4.1.27) from Synechocystis sp.

29% id,
100% cov

Q9M5K3: glycine cleavage system (subunit 5/5) (EC 1.4.1.27) from Arabidopsis thaliana

30% id,
91% cov

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

28% id,
96% cov

More...

BWI76_RS04885: pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase
is similar to:
PaperBLAST

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

38% id,
43% cov

BWI76_RS26040: nitrite reductase large subunit
is similar to:
PaperBLAST

O08749: glycine cleavage system (subunit 1/2) (EC 1.4.1.27) from Mus musculus

24% id,
46% cov

P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

24% id,
43% cov

BWI76_RS04660: 2,4-dienoyl-CoA reductase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

23% id,
36% cov

BWI76_RS17535: rRNA metabolism protein
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

28% id,
26% cov

BWI76_RS04020: 4-hydroxybenzoate 3-monooxygenase
is similar to:
PaperBLAST

P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

34% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2958611-2960122 (frame -1) on NZ_CP020657
is similar to:
PaperBLAST

P31023: pyruvate dehydrogenase system (subunit 1/3) (EC 1.2.1.104); glycine cleavage system (subunit 4/4) (EC 1.4.1.27) from Pisum sativum
Also see hits to annotated proteins above

41% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory