Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella michiganensis M5al (Koxy)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella michiganensis M5al, or try another query

BWI76_RS13080: tyramine oxidase
is similar to:
PaperBLAST

AO1 / O23349: copper-containing amine oxidase (EC 1.4.3.21; EC 1.4.3.10) from Arabidopsis thaliana

31% id,
97% cov

BWI76_RS06445: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

26% id,
60% cov

BWI76_RS18975: UDP-galactopyranose mutase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1354415-1356214 (frame -1) on NZ_CP020657
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea
Also see hits to annotated proteins above

26% id,
62% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory